Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs7797781 | chr7:75874471 | T/C | 8.86E-5 | 485 | 16.22 | 16.62 | 11.3 | KM Plot |
| THCA | rs78003483 | chr4:39470457 | G/A | 4.44E-15 | 489 | 15.9 | 17.38 | 6.1 | KM Plot |
| THCA | rs78003939 | chr6:25339141 | T/C | 8.44E-15 | 484 | 15.15 | 25.38 | 16.72 | KM Plot |
| THCA | rs78012445 | chr6:26195080 | G/C | 2.3E-8 | 489 | 15.48 | 16.8 | 4.75 | KM Plot |
| THCA | rs78013320 | chr4:1379494 | G/A | 2.66E-7 | 484 | 16.07 | 15.07 | 1.13 | KM Plot |
| THCA | rs7802022 | chr7:30022565 | T/C | 7.54E-5 | 484 | 15 | 17.13 | 15.32 | KM Plot |
| THCA | rs78030383 | chr16:21044853 | C/T | 1.6E-6 | 488 | 16.33 | 14 | 27.1 | KM Plot |
| THCA | rs78032881 | chr2:48038779 | T/C | 1.24E-7 | 486 | 15.3 | 18.33 | 8.27 | KM Plot |
| THCA | rs78032956 | chr14:59612317 | C/T | 5.31E-10 | 484 | 15.9 | 16.48 | 6.83 | KM Plot |
| THCA | rs78055062 | chr16:2943251 | G/A | 0.00014 | 484 | 15.23 | 17 | 15.4 | KM Plot |
| THCA | rs78080290 | chr6:24421320 | C/T | 5.55E-15 | 488 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs781066 | chr1:45943156 | T/C | 4.1E-5 | 490 | 16.97 | 16.02 | 10.4 | KM Plot |
| THCA | rs78119395 | chr1:91745036 | A/G | 8.39E-6 | 483 | 15.77 | 17 | 17.77 | KM Plot |
| THCA | rs7811995 | chr7:64236149 | C/T | 7.5E-9 | 476 | 12.6 | 14.33 | 16.73 | KM Plot |
| THCA | rs78126758 | chr2:48121603 | T/C | 4.29E-8 | 489 | 15.2 | 19.47 | 8.27 | KM Plot |